第10回日本蛋白質科学会年会 ポスター賞

2010  

第10回日本蛋白質科学会年会 ポスター賞

2010  

第10回日本蛋白質科学会年会 ポスター賞受

2010  

日本生化学会 J. Biochem.論文賞

2009  

第9回日本蛋白質科学会年会 ポスター賞

2009  

第56回日本生化学会近畿支部例会 優秀発表賞

2009  

日本生化学会 J. Biochem. 論文賞

2000  

The 11th Symposium of Protein Society (Boston, U.S.A.) Award for Best Posters

1997  

Indispensable residue for uridine binding in the uridine-cytidine kinase family Reviewed

Tomoike, F., Nakagawa, N., Fukui, K., Yano, T., Kuramitsu, S., Masui, R.

Biochemistry and Biophysics Reports1   11   93 - 98   2017.07

The Lon protease-like domain in the bacterial RecA paralog RadA is required for DNA binding and repair Reviewed

Inoue Masao, Fukui Kenji, Fujii Yuki, Nakagawa Noriko, Yano Takato, Kuramitsu Seiki, Masui Ryoji

Journal of Biological Chemistry   292 ( 23 )   9801 - 9814   2017.06（ ISSN:0021-9258 ）

Proteome-wide identification of lysine propionylation in thermophilic and mesophilic bacteria: Geobacillus kaustophilus, Thermus thermophilus, Escherichia coli, Bacillus subtilis, and Rhodothermus marinus Reviewed

Okanishi Hiroki, Kim Kwang, Masui Ryoji, Kuramitsu Seiki

Extremophiles   21 ( 2 )   283 - 296   2017.03（ ISSN:1431-0651 ）

Proteome-wide identification of lysine succinylation in thermophilic and mesophilic bacteria Reviewed

Okanishi Hiroki, Kim Kwang, Fukui Kenji, Yano Takato, Kuramitsu Seiki, Masui Ryoji

Biochimica et Biophysica Acta   1865 ( 2 )   232 - 242   2017.02（ ISSN:1570-9639 ）

A specific single-stranded DNA induces a distinct conformational change in the nucleoid-associated protein HU Reviewed

Nishida, Y., Ikeya, T., Mikawa, T., Inoue, J., Ito, Y., Shintani, Y., Masui, R., Kuramitsu, S., Takashima, S.

Biochem. Biophys, Rep.   8   318 - 324   2016.10

A putative adenosine kinase family protein possesses adenosine diphosphatase activity Reviewed

Tomoike Fumiaki, Tsunetou Akiko, Kim Kwang, Nakagawa Noriko, Kuramitsu Seiki, Masui Ryoji

Bioscience, Biotechnology, and Biochemistry   80 ( 11 )   2138 - 2143   2016.08（ ISSN:0916-8451 ）

Crystal structures of a subunit of the formyl­glycinamide ribonucleotide amidotransferase, PurS, from Thermus thermophilus, Sulfolobus tokodaii and Methanocaldococcus jannaschii Reviewed

Watanabe, Y., Yanai, H., Kanagawa, M., Suzuki, S., Tamura, S., Okada, K., Baba, S., Kumasaka, T., Agari, Y., Chen, L., Fu, Z.-Q., Chrzas, J., Wang, B.-C., Nakagawa, N., Ebihara, A., Masui, R., Kuramitsu, S., Yokoyama, S., Sampei, G., Kawai, G.

Acta Crystallographica Section F Structural Biology Communications   72 ( 8 )   627 - 635   2016.08

Molecular mechanisms of substrate specificities of uridine-cytidine kinase Reviewed

Tanaka Wataru, Masui Ryoji, Kuramitsu Seiki, Shigeta Yasuteru, Shoji Mitsuo, Tomoike Fumiaki, Ujiie Yuzuru, Hanaoka Kyohei, Harada Ryuhei, Kayanuma Megumi, Kamiya Katsumasa, Ishida Toyokazu

Biophysics and Physicobiology   13 ( 0 )   77 - 84   2016.06

Structural and biochemical studies on the reaction mechanism of uridine-cytidine kinase Reviewed

Tomoike Fumiaki, Nakagawa Noriko, Kuramitsu Seiki, Masui Ryoji

Protein Journal   34 ( 6 )   411 - 420   2015.12（ ISSN:1572-3887 ）

Roles of Mn-catalase and a possible heme peroxidase homologue in protection from oxidative stress in Thermus thermophilus Reviewed

Extremophiles   19 ( 4 )   775 - 785   2015.07

The role of ribonucleases in regulating global mRNA levels in the model organism Thermus thermophilus HB8 Reviewed

BMC Genomics   15   386   2014.09

Structural insights of post-translational modification sites in the proteome of Thermus thermophilus Reviewed

15 ( 3 )   137 - 151   2014.09

Lysine propionylation is a prevalent post-translational modification in Thermus thermophilus Reviewed

13 ( 9 )   2382 - 2398   2014.09

Acetylome with structural mapping reveals the significance of lysine acetylation in Thermus thermophilus Reviewed

1 ( 9 )   3952 - 3968   2013.09

Crystal structure of the ligand-binding form of nanoRNase from Bacteroides fragilis, a member of the DHH/DHHA1 phosphoesterase family of proteins Reviewed International coauthorship

587 ( 16 )   2669 - 2674   2013.08

MutS stimulates the endonuclease activity of MutL in an ATP-hydrolysis-dependent manner Reviewed

280 ( 14 )   3467 - 3479   2013.07

Unique substrate specificity of purine nucleoside phosphorylases from Thermus thermophilus Reviewed

Extremophiles   17 ( 3 )   505 - 514   2013.05

Lysine and arginine biosyntheses mediated by a common carrier protein in Sulfolobus Reviewed

9 ( 4 )   277 - 283   2013.04

Alkyltransferase-like protein (Atl1) distinguishes alkylated guanines for DNA repair using cation-pi interactions Reviewed International coauthorship

109 ( 46 )   18755 - 18760   2012.11

The role of the PHP domain associated with DNA polymerase X from Thermus thermophilus HB8 in base excision repair Reviewed

DNA Repair   11 ( 11 )   906 - 914   2012.11

Whole-cell proteome reference maps of an extreme thermophile, Thermus thermophilus HB8 Reviewed

Proteomics   12 ( 19-20 )   3063 - 3068   2012.10

Close proximity of phosphorylation sites to ligand in the phosphoproteome of the extreme thermophile Thermus thermophilus HB8 Reviewed

Proteomics   12 ( 9 )   1414 - 1430   2012.05

A non-cold-inducible cold shock protein homolog mainly contributes to translational control under optimal growth conditions Reviewed

279 ( 6 )   1014 - 1029   2012.03

The structural basis of the kinetic mechanism of a gap-filling X-family DNA polymerase that binds Mg2+-dNTP before binding to DNA Reviewed

417 ( 3 )   179 - 196   2012.03

In vivo, in vitro, and X-ray crystallographic analyses suggest the involvement of an uncharacterized TIM barrel protein in protection against oxidative stress Reviewed

286 ( 48 )   41636 - 41646   2011.12

Commensal symbiotic interrelationship for the growth of Symbiobacterium toebii with its partner bacterium, Geobacillus toebii Reviewed International coauthorship

BMC Research Notes   4   437   2011.10

Characterization of C- and N-terminal domains of Aquifex aeolicus MutL endonuclease: N-terminal domain stimulates the endonuclease activity of C-terminal domain in a zinc-dependent manner Reviewed

31 ( 5 )   309 - 322   2011.10

An alkyltransferase-like protein from Thermus thermophilus HB8 affects the regulation of gene expression in alkylation response Reviewed

J. Biochem.   150 ( 3 )   327 - 339   2011.09

A single amino acid limits the substrate specificity of Thermus thermophilus uridine-cytidine kinase to cytidine Reviewed

Biochemistry   50 ( 21 )   4597 - 4607   2011.05

Inactivation of DNA repair genes mutS and mutL or the anti-recombination gene mutS2 leads to activation of vitamin B1 biosynthesis genes in Thermus thermophilus HB8 Reviewed

PLoS One   6 ( 4 )   e19053   2011.04

An additional C-terminal loop in endonuclease IV, an apurinic/apyrimidinic endonuclease, controls binding affinity to DNA Reviewed

67 ( 3 )   149 - 155   2011.03

Role of alkyltransferase-like (ATL) protein in repair of methylated DNA lesions in Thermus thermophilus Reviewed

Mutagenesis   26 ( 2 )   303 - 308   2011.03

Role of RecJ-like exonuclease with 5'-3' exonuclease in oligo(deoxy)nucleotide degradation Reviewed

286 ( 4 )   2807 - 2816   2011.01

A novel single-stranded DNA-specific 3'-5' exonuclease, Thermus thermophilus exonuclease I, is involved in several DNA repair pathways Reviewed

38 ( 17 )   5692 - 5705   2010.09

Very rapid induction of a cold shock protein by temperature downshift in Thermus thermophilus Reviewed

399 ( 3 )   336 - 340   2010.08

Crystal structure of an archaeal cleavage and polyadenylation specificity factor subunit from Pyrococcus horikoshii Reviewed

Proteins   78 ( 10 )   2395 - 2398   2010.08

The first crystal structure of an archaeal metallo-β-lactamase superfamily protein; ST1585 from Sulfolobus tokodaii Reviewed

Proteins   78 ( 10 )   2399 - 2402   2010.08

Structure of ST0929, a putative glycosyl transferase from Sulfolobus tokodaii Reviewed

66 ( 4 )   397 - 400   2010.04

Structure of RecJ exonuclease defines its specificity for single-stranded DNA Reviewed

285 ( 13 )   9762 - 9769   2010.03

Crystal structure of the conserved hypothetical protein TTHA1606 from Thermus thermophilus HB8 Reviewed

76 ( 1 )   244 - 248   2009.07

Degradation of ppGpp by nudix pyrophosphatase modulates the transition of growth phase in the bacterium Thermus thermophilus Reviewed

284 ( 23 )   15549 - 15556   2009.06

Two dNTP triphosphohydrolases from Pseudomonas aeruginosa possess diverse substrate specificities Reviewed

276 ( 12 )   3211 - 3221   2009.06

Characterization of DNA polymerase X from Thermus thermophilus HB8 reveals the POLXc and PHP domains are both required for 3'-5' exonuclease activity Reviewed

37 ( 6 )   2037 - 2052   2009.04

Crystal structure of MutS2 endonuclease domain and the mechanism of homologous recombination supression Reviewed

283 ( 48 )   33417 - 33427   2008.11

Crystal structure of a putative DNA methylase TTHA0409 from Thermus thermophilus HB8 Reviewed

Proteins   73 ( 1 )   259 - 264   2008.10

Bound nucleotide controls the endonuclease activity of mismatch repair enzyme MutL Reviewed

283 ( 18 )   12136 - 12145   2008.05

Isolation of uncultivable anaerobic thermophiles of the family Clostridiaceae requiring growth-supporting factors Reviewed International coauthorship

18 ( 4 )   611 - 615   2008.04

Characterization of growth-supporting factors produced by Geobacillus toebii for the commensal thermophile Symbiobacterium toebii. Reviewed International coauthorship

18 ( 3 )   490 - 496   2008.03

Insights into different dependence of dNTP triphosphohydrolase on metal ion species from intracellular ion concentrations in Thermus thermophilus Reviewed

Extremophiles   12 ( 2 )   217 - 223   2008.03

An O6-methylguanine-DNA methyltransferase-like protein from Thermus thermophilus interacts with a nucleotide excision repair protein Reviewed

J. Biochem.   144 ( 2 )   267 - 277   2008.02

Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8 Reviewed

190 ( 3 )   1108 - 1117   2008.02

Crystal structure of family 5 uracil-DNA glycosylase bound to DNA Reviewed

373 ( 4 )   839 - 850   2007.11

Analysis of a nuclease activity of catalytic domain of Thermus thermophilus MutS2 by high-accuracy mass spectrometry Reviewed

35 ( 15 )   e100   2007.08

Simultaneous detection of N-terminal fragment ions in a protein mixture using a ruthenium(II) complex Reviewed

21 ( 16 )   2647 - 2653   2007.07

High sequence-coverage detection of proteolytic peptides using a bis(terpyridine)ruthenium(II) complex Reviewed

Analyst   132 ( 4 )   358 - 364   2007.04

Structure of archaeal glyoxylate reductase from Pyrococcus horikoshii OT3 complexed with nicotinamide adenine dinucleotide phosphate Reviewed

63 ( 3 )   357 - 365   2007.03

Rapid SNP diagnostics using asymmetric isothermal amplification and a new mismatch-suppression technology Reviewed

4 ( 3 )   257 - 262   2007.03

Structure of dNTP-inducible dNTP triphosphohydrolase: insight into broad specificity for dNTPs and triphosphohydrolase-type hydrolysis Reviewed

63 ( 2 )   230 - 239   2007.02

Nuclease activity of the MutS homologue MutS2 from Thermus thermophilus is confined to the Smr domain Reviewed

35 ( 3 )   850 - 856   2007.01

Crystal structure of TTHA0252 from Thermus thermophilus HB8, a RNA degradation protein of the metallo-beta-lactamase superfamily Reviewed

140 ( 4 )   535 - 542   2006.10

Crystal structure of hypothetical protein TTHB192 from Thermus thermophilus HB8 reveals a new protein family with an RNA recognition motif-like domain Reviewed

15 ( 6 )   1494 - 1499   2006.06

Improved heterologous gene expression in Escherichia coli by optimization of the AT-content of codons immediately downstream of the initiation codon Reviewed

120 ( 4 )   341 - 346   2005.12

Distinction of Leu and Ile Using a Ruthenium(II) complex by MALDI-LIFT-TOF/TOF-MS analysis Reviewed

77 ( 20 )   6618 - 6624   2005.10

Functional reconstitution of a crenarchaeal splicing endonuclease in vitro Reviewed

334 ( 4 )   1254 - 1259   2005.09

Novel reaction mechanism of GTP cyclohydrolase I. High-resolution X-ray crystallography of Thermus thermophilus HB8 enzyme complexed with a transition state analogue, the 8-oxoguanine derivative Reviewed

138 ( 3 )   263 - 275   2005.09

Molecular mechanism of the Thermus thermophilus ADP-ribose pyrophosphatase from mutational and kinetic studies Reviewed

Biochemistry   44 ( 26 )   9320 - 9329   2005.07

Inference of S-system models of genetic networks using a cooperative coevolutionary algorithm Reviewed

Bioinformatics   21 ( 7 )   1154 - 1163   2005.04

Structure of P-protein of the glycine cleavage system: implications for nonketotic hyperglycinemia Reviewed

24 ( 8 )   1523 - 1536   2005.04

Structure-based functional identification of a novel heme-binding protein from Thermus thermophilus HB8 Reviewed

6 ( 1 )   21 - 32   2005.04

Inhibition of Thermus thermophilus HB8 thioredoxin activity by platinum(ii) Reviewed

6   1023 - 1026   2005.03

Multidrug transporter MexB of Pseudomonas aeruginosa: overexpression, purification, and initial structural characterization Reviewed

40 ( 1 )   91 - 100   2005.03

A novel metal-activated L-serine O-acetyltransferase from Thermus thermophilus HB8 Reviewed

136 ( 5 )   629 - 634   2004.11

Rapid and sensitive amino-acid sequencing of cloning Thermusthermophilus HB8 ferredoxin by proteomics Reviewed

3 ( 5 )   983 - 987   2004.10

Biochemical characterization of TT1383 from Thermus thermophilus identifies a novel dNTP triphosphohydrolase activity stimulated by dATP and dTTP Reviewed

136 ( 2 )   221 - 231   2004.08

Structural insights into the Thermus thermophilus ADP-ribose pyrophosphatase mechanism via crystal structures with the bound substrate and metal. Reviewed

279 ( 35 )   37163 - 37174   2004.08

Crystal structure of the native chaperonin complex from Thermus thermophilus revealed unexpected asymmetry at the cis-cavity Reviewed

Structure   12 ( 8 )   1471 - 1480   2004.08

The Nudix hydrolase Ndx1 from Thermus thermophilus HB8 is a diadenosine hexaphosphate hydrolase with a novel activity Reviewed

279 ( 21 )   21732 - 21739   2004.05

Ligand-induced conformational changes and a reaction intermediate in branched-chain 2-oxo acid dehydrogenase (E1) from Thermus thermophilus HB8, as revealed by X-ray crystallography Reviewed

337 ( 4 )   1011 - 1033   2004.04

Thermus thermophilus MutS2, a MutS paralogue, possesses an endonuclease activity effected by MutL Reviewed

135 ( 3 )   375 - 384   2004.03

Trigger factor from Thermus thermophilus is a Zn2+-dependent chaperone Reviewed

279 ( 8 )   6380 - 6384   2004.02

Crystal structure of a family 4 uracil-DNA glycosylase from Thermus thermophilus HB8 Reviewed

333 ( 3 )   515 - 526   2003.10

Overproduction, crystallization and preliminary diffraction data of ADP-ribose pyrophosphatase from Thermus thermophilus HB8 Reviewed

59 ( 10 )   1840 - 1842   2003.10

Crystallization and preliminary X-ray diffraction studies of nucleoside diphosphate kinase from Thermus thermophilus HB8 Reviewed

59 ( 10 )   1843 - 1845   2003.10

Coexpression, purification, crystallization and preliminary X-ray characterization of glycine decarboxylase (P-protein) of the glycine-cleavage system from Thermus thermophilus HB8 Reviewed

59 ( 9 )   1610 - 1618   2003.09

Structure of Thermus thermophilus HB8 H-protein of the glycine-cleavage system, resolved by a six-dimensional molecular-replacement method Reviewed

Nakai, T., Ishijima, J., Masui, R., Kuramitsu, S., Kamiya, N.

Acta Crystallographica Section D Biological Crystallography   D59 ( 9 )   1610 - 1618   2003.09

Fluorescence resonance energy transfer analysis of protein translocase. SecYE from Thermus thermophilus HB8 forms a constitutive oligomer in membranes Reviewed

278 ( 16 )   14257 - 14264   2003.04

Overproduction, crystallization and preliminary X-ray diffraction analysis of a quinone oxidoreductase from Thermus thermophilus HB8 Reviewed

58 ( 8 )   1365 - 1367   2002.08

The crystal structure of exonuclease RecJ bound to Mn2+ ion suggests how its characteristic motifs are involved in exonuclease activity Reviewed

99 ( 9 )   5908 - 5912   2002.04

Crystal structure of thermostable DNA photolyase: Pyrimidine-dimer recognition mechanism Reviewed

98 ( 24 )   13560 - 13565   2001.11

Overexpression, purification and characterization of RecJ protein from Thermus thermophilus HB8 and its core domain Reviewed

29 ( 22 )   4617 - 4624   2001.11

Cloning and overexpression of the oah1 gene encoding O-acetyl-L-homoserine sulfhydrylase of Thermus thermophilus HB8 and characterization of the gene product Reviewed

1549 ( 1 )   61 - 72   2001.09

Crystallization and preliminary X-ray studies of a thermostable DNA photolyase from Thermus thermophilus HB8 Reviewed

8 ( 6 )   495 - 498   2001.06

Observation of RecA protein monomer by small angle X-ray scattering with synchrotron radiation Reviewed

482 ( 42737 )   159 - 162   2000.09

Interaction of UvrA and UvrB proteins with a fluorescent single-stranded DNA. Implication for slow conformational change upon interaction of UvrB with DNA Reviewed

275 ( 18 )   13235 - 13242   2000.05

Fluorescence and Excitation Escherichia coli RecA protein spectra analyzed separatedly for tyrosine and tryptophan residues Reviewed International coauthorship

376 ( 1 )   124 - 140   2000.04

The RadA protein from a hyperthermophilic archaeon Pyrobaculum islandicum is a DNA-dependent ATPase that shows two disparate catalytic modes, with a transition termperature at 75 degrees C Reviewed International coauthorship

267 ( 4 )   1125 - 1137   2000.02

Efficient strand transfer by the RadA recombinase from the hyperthermophilic archaeon Desulfurococcus amylolyticus Reviewed International coauthorship

182 ( 1 )   130 - 134   2000.01

Crystal structure of Thermus thermophilus HB8 UvrB protein, a key enzyme of nucleotide excision repair Reviewed

126 ( 6 )   986 - 990   1999.12

Purification, molecular cloning, and catalytic activity of Schizosaccharomyces pombe pyridoxal reductase. A possible additional family in the aldo-keto reductase superfamily Reviewed

274 ( 33 )   23185 - 23190   1999.08

Crystallization and preliminary X-ray diffraction studies of a DNA excision repair enzyme, UvrB, from Thermus thermophilus HB8 Reviewed

55 ( 3 )   705 - 705   1999.03

Characterization of the oligomeric states of RecA protein: monomeric RecA protein can form a nucleoprotein filament Reviewed

Biochemistry   37 ( 42 )   14788 - 14797   1998.10

Domain organization and functional analysis of Thermus thermophilus MutS protein Reviewed

26 ( 18 )   4153 - 4159   1998.09

Probing of DNA-binding site of Escherichia coli RecA protein by utilizing 1-anilinonaphthalene-8-sulfonic acid Reviewed

Biochemistry   37 ( 35 )   12133 - 12143   1998.09

Local folding of the N-terminal domain of Escherichia coli RecA controls protein-protein interaction Reviewed

272 ( 44 )   27707 - 27715   1997.10

Domain structure of Thermus thermophilus UvrB protein. Similarity in domain structure to a helicase Reviewed

272 ( 36 )   22703 - 22713   1997.09

RecA protein has extremely high cooperativity for substrate in its ATPase activity Reviewed

123   450 - 457   1997.03

An aspartate aminotransferase from an extremely thermophilic bacterium, Thermus thermophilus HB8 Reviewed

119 ( 1 )   135 - 144   1996.01

N-terminal 33 amino acid residues of Escherichia coli RecA protien contribute to its self-assembly Reviewed

J. Mol. Biol.   250 ( 4 )   471 - 483   1995.07

Interaction of RecA protein with ATP and its analogues Reviewed

116 ( 5 )   960 - 966   1994.11

The presence of free D-serine, D-alanine, and D-proline in human plasma Reviewed

Experientia   48 ( 3 )   986 - 988   1992.03

Amino acid sequences of ferredoxins from Alocasia macrorrhiza Schott in Papua New Guinea Reviewed

5 ( 1 )   13 - 19   1992.01

The amino acid sequences of the 9kDa polypeptide and partial amino acid sequence of the 20kDa polypeptide of mitochondrial NADH:ubiquinone oxidoreductase Reviewed International coauthorship

110 ( 4 )   575 - 582   1991.10

The amino acid sequences of two 13kDa polypeptides and partial amino acid sequence of 30kDa polypeptide of complex I from bovine heart mitochondria: Possible location of iron-sulfur clusters Reviewed International coauthorship

109 ( 4 )   534 - 543   1991.04

Characterization, amino acid sequence and phylogenetic considerations regarding the ferredoxin from Ochromonas danica Reviewed International coauthorship

Phytochemistry   27 ( 9 )   2817 - 2820   1988.09

Properties and amino acid sequence of the ferredoxin from the unicellular cyanobacterium Synechococcus 6307 Reviewed International coauthorship

Phytochemistry   27 ( 9 )   2821 - 2826   1988.09

Properties and structure of the ferredoxin from Synechococcus 6301 (Anacystis nidulans) Reviewed International coauthorship

Biochemical Journal   252 ( 2 )   571 - 575   1988.06

Molecular mechanisms of the whole DNA repair system: A comparison of bacterial and eukaryotic systems Reviewed

2010   179594   2010.10

In vivo substrate screening for overlooked enzyma activiy Invited Reviewed

Takushi Ooga, Ryoji Masui

47 ( 12 )   814   2009.12

Structural proteomics of metabolism-related proteins Invited

Tanpakushitsu Kakusan Kouso   53 ( 5 )   604 - 607   2008.04

酵素ハンドブック（第３版） Reviewed

増井　良治

朝倉書店   2008

タンパク3000の成果とインパクト：個別的解析拠点の研究成果：代謝系 Reviewed

増井　良治

蛋白質核酸酵素   53(5), 604-607   2008

生化学辞典（第４版） Invited Reviewed

増井　良治

東京科学同人   2007

Structural-Biological Whole Cell Project of Thermus thermophilus HB8：From Structural Genomics to Systems Biology

The Journal of the Crystallographic Society of Japan   48   403 - 410   2006.12

MutM: Single C2C2 zinc finger-DNA interaction

"Zinc Finger Proteins: from Atomic Contact to Cellular Function" (edited by Shiro Iuchi and Natalie Kuldell), Landes Bioscience   2005.02

Genome sequence analysis of an extreme thermophile Thermus thermophilus HB8

113 - 128   2004.04

Mutagenesis of genes by PCR

2003.10

Overexpression and preparation of tagged proteins in microorganisms Invited

114 - 130   2002.10

Systematic expression of bacterial proteins Invited Reviewed

Tanpakushitsu Kakusan Kouso   47 ( 8, suppl )   1009 - 1013   2002.08

Repair mechanism of oxidative DNA damages Invited Reviewed

Tanpakushitsu Kakusan Kouso   46 ( 11 )   1618 - 1624   2001.11

Structure-function relationships of the DNA repair protein UvrB from Thermus thermophilus Invited

Tanpakushitsu Kakusan Kouso   46 ( 8 )   968 - 975   2001.08

Structural genomics projects in Japan Reviewed

7 ( 11, supp )   943 - 945   2000.11

What can we learn from the whole genome sequences of thermopiles Invited Reviewed

Tanpakushitsu Kakusan Kouso   44 ( 2 )   165 - 170   1999.02

Nucleotide excision repair in prokaryotes Invited

Jikken Igaku   16 ( 8 )   1069 - 1075   1998.08

Structural and functional characterization of a bacterial protein kinase with the P-loop motif Domestic conference

2021.12 

Structural and functional analysis of the bacterial small Zn-finger protein Domestic conference

2021.12 

In vivo analysis of functional regions within a novel RHH-type DNA-binding protein Domestic conference

2021.12 

Involvement of the C-terminal helix of a novel RHH-type DNA-binding protein in phosphorylation-dependent regulatio Domestic conference

2021.11 

バクテリア由来small Zn-finger proteinの機能・構造解析 Domestic conference

栗波紗生, 福井健二, 村川武志, 矢野貴人, 増井良治

第67回日本生化学会近畿支部例会  2021.05 

Biochemical characterization of a small zinc-finger protein from Thermus thermophilus Domestic conference

Saki Kurinami，Ryoji Masui

The 43rd Annual Meeting of the Molecular Biology Society of Japan  2020.12 

Phosphoregulation of a Thermus ribbon-helix-helix-type DNA-binding protein requires a conformational change in the negatively charged C-terminal helix Domestic conference

Aoi Inoue，Kazuya Takao，Kenji Fukui，Masao Inoue，Yuki Fujii，Takato Yano，Ryoji Masui

The 43rd Annual Meeting of the Molecular Biology Society of Japan  2020.12 

Genetic and biochemical characterization of a bacterial protein kinase with the Walker A motif Domestic conference

Masayuki Torii, Yota Iio, Suzuka Yamasaki, Ryoji Masui

The 43rd Annual Meeting of the Molecular Biology Society of Japan  2020.12 

Structural change of a thermophilic protein kinase induced by ATP binding Domestic conference

Masayuki Torii, Yusuke Fujino, Masao Inoue, Yuki Fujii, Hiroki Okanishi, Yoshikatsu Kanai, Ryoji Masui

The 21 st Annual Meeting of the Japanese Society for Extremophiles  2020.11 

Structural basis for substrate recognition by cytidylate kinase Domestic conference

Ryosuke Mega, Noriko Nakagawa, Seiki Kuramitsu. Ryoji Masui

The 42nd Annual Meeting of the Molecular Biology Society of Japan  2019.12 

Analysis of functionally unknown proteins related to nucleic acid transaction Domestic conference

Kenji Fukui, Yuki Fujii, Taisuke Wakamatsu, Ryoji Masui

第42回 日本分子生物学会年会  2019.12 

Structural and functional domain analysis of fatty acid kinase Domestic conference

Maya Nakatani, Taihei Murakami, Hiroki Okanishi, Makoto Miyata, Ryoji Masui

The 42nd Annual Meeting of the Moleular Bioloy Society of Japan  2019.12 

NurA and HerA in bacteria contribute to the repair of UV-induced lesions with recombination mediator proteins Domestic conference

Yuki Fujii, Masao Inoue, Kenji Fukui, Ryoji Masui

The 42nd Annual Meeting of the Moleular Bioloy Society of Japan  2019.12 

Analysis of functionally unknown proteins related to nucleic acid transaction Domestic conference

Kenji Fukui, Yuki Fujii, Taisuke Wakamatsu, Ryoji Masui

第42回 日本分子生物学会年会  2019.12 

Structural and functional domain analysis of fatty acid kinase Domestic conference

Maya Nakatani, Taihei Murakami, Hiroki Okanishi, Makoto Miyata, Ryoji Masui

The 42nd Annual Meeting of the Moleular Bioloy Society of Japan  2019.12 

NurA and HerA in bacteria contribute to the repair of UV-induced lesions with recombination mediator proteins Domestic conference

Yuki Fujii, Masao Inoue, Kenji Fukui, Ryoji Masui

The 42nd Annual Meeting of the Moleular Bioloy Society of Japan  2019.12 

Mechanism of drastic stabilization by ATP of a thermophilic protein kinase structure Domestic conference

Yusuke Fujino, Masao Inoue, Yuki Fujii, Ryoji Masui

The 20th Annual Meeting of the Japanese Society for Extremophiles  2019.11 

Structural basis for ligand binding to CMP kinase revealed by X-ray crystallographic analysis of the different liganded forms Domestic conference

Ryosuke Mega, Noriko Nakagawa, Seiki Kuramitsu, Ryoji Masui

The 92nd Annual Meeting of the Japanese Biochemical Society  2019.09 

Structural and functional analysis of fatty acid kinase of Thermus thermophilus HB8 International conference

Maya Nakatani, Taihei Murakami,, Hiroki Okanishi,, Norie Araki, Makoto Miyata, Ryoji Masui

10th OCARINA International Symposium  2019.03 

Analysis of functionally unknown proteins in Thermus thermophilus Domestic conference

Ryoji Masui

第41回日本分子生物学会年会  2018.11 

高度好熱菌脂肪酸キナーゼの構造機能解析 Domestic conference

中谷 茉矢, 村上 泰平, 岡西 広樹, 荒木 令江, 増井 良治

第91回日本生化学会大会  2018.09  (公社)日本生化学会

高度好熱菌脂肪酸キナーゼの構造機能解析 Domestic conference

中谷茉矢，村上泰平，岡西広樹，荒木令江，増井良治

第65回日本生化学会近畿支部例会  2018.05 

DNA-binding activity of the multifunctional enzyme, nucleoside diphosphate kinase International conference

Chinami Sako, Masaaki Miyamoto, Satoshi Akanuma, Ryoji Masui

9th OCARINA International Symposium  2018.03 

高度好熱菌 protein kinase TpkD の構造安定性に対する ATP の効果 Domestic conference

藤野 友輔, 井上 真男, 藤井 裕己, 倉光 成紀, 増井 良治

生命科学系学会合同年次大会  2017.12  生命科学系学会合同年次大会運営事務局

多機能酵素ヌクレオシドニリン酸キナーゼのDNA結合活性 Domestic conference

佐古 千菜美, 宮本 昌明, 赤沼 哲史, 増井 良治

生命科学系学会合同年次大会  2017.12  生命科学系学会合同年次大会運営事務局

リン酸基転移酵素にみられる基質特異性の広がりと新たな機能獲得 Domestic conference

増井 良治

生命科学系学会合同年次大会  2017.12  生命科学系学会合同年次大会運営事務局

リン酸化を介してDNA結合能が制御される新奇なDNA結合タンパク質の立体構造解析 Domestic conference

高尾 和也, 飯尾 洋太, 井上 真男, 藤井 裕己, 倉光 成紀, 増井 良治

生命科学系学会合同年次大会  2017.12  生命科学系学会合同年次大会運営事務局

DNA修復酵素RadAのLonプロテアーゼ様ドメインはDNA結合活性を持つ Domestic conference

井上 真男, 福井 健二, 藤井 裕己, 中川 紀子, 矢野 貴人, 倉光 成紀, 増井 良治

生命科学系学会合同年次大会  2017.12  生命科学系学会合同年次大会運営事務局

多機能酵素ヌクレオシドニリン酸キナーゼのDNA結合活性 Domestic conference

佐古 千菜美, 宮本 昌明, 赤沼 哲史, 増井 良治

生命科学系学会合同年次大会  2017.12  生命科学系学会合同年次大会運営事務局

Functional analysis of new proteases from an extremely thermophilic organism, Thermus thermophilus HB8 International conference

Yumi Kimura, Daisuke Sasaki, Naoya Fujimura, Tadashi Ono, Chinami Sako, Suzuka Yamasaki, Ryoji Masui, Noriko Nakagawa

The 31st Annual Symposium of The Protein Society  2017.07 

翻訳後修飾を受ける機能未知DNA結合タンパク質の構造機能解析 Domestic conference

高尾和也，飯尾洋太，井上真男,，藤井裕己，倉光成紀，増井良治

酵素補酵素研究会2017  2017.06 

高度好熱菌protein kinase TpkDの構造安定性に対するATPの効果 Domestic conference

藤野友輔, 井上真男, 藤井裕己, 倉光成紀, 増井良治

酵素補酵素研究会2017  2017.06 

DNA 修復酵素 RadA の Lon プロテアーゼ様ドメインは DNA 結合活性を持つ Domestic conference

井上真男, 福井健二, 藤井裕己, 中川紀子, 矢野貴人, 倉光成紀, 増井良治

酵素補酵素研究会2017  2017.06 

Effects of ATP on structural stability of protein kinase TpkD from Thermus thermophilus HB8 Domestic conference

Yusuke Fujino, Masao Inoue,, Yuki Fujii, Seiki Kuramitsu, Ryoji Masui

第17回日本蛋白質科学会年会  2017.06 

Structural and functional analysis of a novel DNA-binding protein TkaP from Thermus thermophilus HB8 Domestic conference

Kazuya Takao, Yota Iio, Masao Inoue, Yuki Fujii, Seiki Kuramitsu, Ryoji Masui

第17回日本蛋白質科学会年会  2017.06 

多機能酵素ヌクレオシド二リン酸キナーゼのDNA結合活性 Domestic conference

佐古千菜美，宮本昌明，赤沼哲史，増井良治

第64回日本生化学会近畿支部例会  2017.05 

Structural and functional analysis of a novel DNA-binding protein TkaP from Thermus thermophilus HB8 International conference

Kazuya Takao, Yota Iio, Masao Inoue, Yuki Fujii, Yu-hei Tahara, Makoto Miyata, Seiki Kuramitsu, Ryoji Masui

8th OCARINA International Symposium  2017.03 

NurA and HerA of the Extremely Thermophilic Eubacterium Thermus thermophilus HB8 International conference

Yuki Fujii, Masao Inoue, Kenji Fukui, Kwang Kim, Seiki Kuramitsu, Ryoji Masui

Extremophiles 2016  2016.09 

高度好熱菌Thermus thermophilus HB8由来の新奇なDNA結合タンパク質(TkaP)の構造・機能的解析 Domestic conference

高尾 和也, 飯尾 洋太, 井上 真男, 藤井 裕己, 藤野 友輔, 倉光 成紀, 増井 良治

第89回日本生化学会大会  2016.09  (公社)日本生化学会

高度好熱菌protein kinase TpkDの構造安定性に対するリガンドの効果 Domestic conference

藤野 友輔, 宮川 武朗, 井上 真男, 藤井 裕己, 倉光 成紀, 増井 良治

第89回日本生化学会大会  2016.09  (公社)日本生化学会

Post-translational acylations occurring in a wide range of organisms: lysine acetylation, propionylation, and succinylation Domestic conference

Okanishi Hiroki, Kobayashi Daiki, Araki Norie, Masui Ryoji, Kuramitsu Seiki

2016 Annual Meeting of Japanese Proteomics Society  2016.07 

DNA 相同組換えに関わる RecA パラログタンパク質 RadA/Sms が持つ Lon プロテアーゼ様ドメインの構造と機能 Domestic conference

井上真男, 福井健二, 藤井裕己, 矢野貴人, 倉光成紀, 増井良治

第16回日本蛋白質科学会年会  2016.06 

バクテリア由来アーキア型ヌクレアーゼNurAとヘリカーゼHerAの細胞機能解析 Domestic conference

藤井 裕己, 井上 真男, 福井 健二, 金 光, 倉光 成紀, 上田 昌宏, 増井 良治

日本生化学会大会・日本分子生物学会年会合同大会講演要旨集  2015.12  (公社)日本生化学会

RecA様タンパク質RadA/Sms C末端ドメインの構造と機能 Domestic conference

井上 真男, 福井 健二, 藤井 裕己, 矢野 貴人, 倉光 成紀, 増井 良治

日本生化学会大会・日本分子生物学会年会合同大会講演要旨集  2015.12  (公社)日本生化学会

バクテリアにおける翻訳後修飾　高度好熱菌におけるアシル化プロテオーム解析 Domestic conference

岡西 広樹, 金 光, 増井 良治, 倉光 成紀

日本生化学会大会プログラム・講演要旨集  2014.10  (公社)日本生化学会

ウリジンシチジンキナーゼ中のウリジンのプロトン化状態についての理論的研究 Domestic conference

田中 弥, 氏家 謙, 友池 史明, 庄司 光男, 栢沼 愛, 増井 良治, 倉光 成紀, 重田 育照

日本生化学会大会プログラム・講演要旨集  2014.10  (公社)日本生化学会

ウリジンシチジンキナーゼの基質結合相互作用についての理論的研究(A theoretical study on the substrate bindings in uridine-cytidine kinase) Domestic conference

Tanaka Wataru, Ujiie Yuzuru, Tomoike Fumiaki, Shoji Mitsuo, Kayanuma Megumi, Masui Ryoji, Kuramitsu Seiki, Shigeta Yasuteru

生物物理  2014.08  (一社)日本生物物理学会

耐熱性ミスマッチDNA修復蛋白質を利用したPCR法の改良 Domestic conference

福井 健二, 島田 敦広, 豊竹 洋佑, 増井 良治, 倉光 成紀

日本生化学会大会プログラム・講演要旨集  2013.09  (公社)日本生化学会

短鎖DNA/RNA特異的エキソヌクレアーゼの立体構造と反応機構 Domestic conference

植村 有里, 若松 泰介, 中川 紀子, Hunt John Francis, Montelione Gaetano Thomas, 倉光 成紀, 増井 良治

日本生化学会大会プログラム・講演要旨集  2013.09  (公社)日本生化学会

少数のアミノ酸残基によって決定されるプリンヌクレオシドホスホリラーゼの基質特異性 Domestic conference

友池 史明, 倉光 成紀, 増井 良治

日本生化学会大会プログラム・講演要旨集  2013.09  (公社)日本生化学会

高度好熱菌丸ごと一匹解析　異なるファミリーに属するプロテインキナーゼは異なる耐熱化機構を持つ Domestic conference

宮川 武朗, 飯尾 洋太, 増井 良治, 倉光 成紀

日本生化学会大会プログラム・講演要旨集  2012.12  (公社)日本生化学会

短鎖DNA/RNA特異的エキソヌクレアーゼの反応機構 Domestic conference

植村 有里, 若松 泰介, Hunt John, Montelione Gaetano, 中川 紀子, 増井 良治, 倉光 成紀

日本生化学会大会プログラム・講演要旨集  2012.12  (公社)日本生化学会

単一のアミノ酸残基によって決定されるuridine-cytidine kinaseの基質特異性 Domestic conference

友池 史明, 中川 紀子, 増井 良治, 倉光 成紀

日本生化学会大会プログラム・講演要旨集  2012.12  (公社)日本生化学会

Thermus thermophilus HB8の全細胞解析 RNaseによるmRNA分解の調節(Whole cell analysis of Thermus thermophilus HB8: The regulation of mRNA decay by RNases) Domestic conference

Ohyama Hiromasa, Agari Yoshihiro, Fukui Kenji, Nakagawa Noriko, Shinkai Akeo, Masui Ryoji, Kuramitsu Seiki

日本生化学会大会プログラム・講演要旨集  2012.12  (公社)日本生化学会

RecA様蛋白質RadA/Smsの分子機能解析 Domestic conference

井上 真男, 福井 健二, 中川 紀子, 増井 良治, 倉光 成紀

日本生化学会大会プログラム・講演要旨集  2012.12  (公社)日本生化学会

DNAミスマッチ修復タンパク質MutS-MutL間相互作用の動態解析 Domestic conference

秦 義人, 島田 敦広, 増井 良治, 福井 健二, 倉光 成紀

日本生化学会大会プログラム・講演要旨集  2012.12  (公社)日本生化学会

DNAポリメラーゼXが持つPHPドメインの塩基除去修復系における役割 Domestic conference

中根 修平, 中川 紀子, 倉光 成紀, 増井 良治

日本生化学会大会プログラム・講演要旨集  2012.12  (公社)日本生化学会

ATP加水分解にともなうMutSによるMutLの活性化 Domestic conference

島田 敦広, 増井 良治, 倉光 成紀, 福井 健二

日本生化学会大会プログラム・講演要旨集  2012.12  (公社)日本生化学会

単一のアミノ酸残基によって決定されるuridine-cytidine kinaseの基質特異性 Domestic conference

友池 史明, 中川 紀子, 増井 良治, 倉光 成紀

日本生化学会大会プログラム・講演要旨集  2012.12  (公社)日本生化学会

短鎖DNA/RNA特異的エキソヌクレアーゼの反応機構 Domestic conference

植村 有里, 若松 泰介, Hunt John, Montelione Gaetano, 中川 紀子, 増井 良治, 倉光 成紀

日本生化学会大会プログラム・講演要旨集  2012.12  (公社)日本生化学会

ヒトタイプMutLにおけるATP依存的構造機能変化　立体構造予測を利用した構造機能解析 Domestic conference

飯野 均, 金 光, 山本 竜也, 島田 敦広, 増井 良治, 倉光 成紀, 福井 健二

日本生化学会大会・日本分子生物学会年会合同大会講演要旨集  2010.12  (公社)日本生化学会

海外特別研究1

2023   Intensive lecture   Graduate school

機能解析生物学特別講義B

2023   Intensive lecture   Graduate school

機能解析生物学演習2A

2023   Weekly class   Graduate school

機能解析生物学演習1A

2023   Weekly class   Graduate school

機能解析生物学特論A

2023   Weekly class   Graduate school

機能解析生物学特論A

2023   Weekly class   Graduate school

生物学の潮流

2023   Intensive lecture   Undergraduate

生物学実験A

2023   Practical Training   Undergraduate

生物学特別研究4A

2023   Intensive lecture   Graduate school

生物学特別研究3A

2023   Intensive lecture   Graduate school

海外特別研究4

2023   Intensive lecture   Graduate school

海外特別研究3

2023   Intensive lecture   Graduate school

機能解析生物学特別演習

2023   Intensive lecture   Graduate school

機能解析生物学ゼミナール

2023   Intensive lecture   Graduate school

後期海外特別研究２

2023   Intensive lecture   Graduate school

後期特別研究

2023   Intensive lecture   Graduate school

後期特別研究

2023   Intensive lecture   Graduate school

生物分子機能学ゼミナール

2023   Intensive lecture   Graduate school

海外特別研究

2023   Intensive lecture   Undergraduate

生物学実験Ｓ

2023   Practical Training   Undergraduate

特別研究

2023   Intensive lecture   Undergraduate

専門生物学演習

2023   Intensive lecture   Undergraduate

代謝生化学2

2023   Weekly class   Undergraduate

生物学実験B

2023   Practical Training   Undergraduate

生命と環境

2023   Weekly class   Undergraduate

生物学特別研究4B

2023   Intensive lecture   Graduate school

前期海外特別研究１

2023   Intensive lecture   Graduate school

生物学前期特別研究Ⅱ

2023   Intensive lecture   Graduate school

生物学特別研究2B

2023   Intensive lecture   Graduate school

生物学特別研究1B

2023   Intensive lecture   Graduate school

機能解析生物学演習2B

2023   Weekly class   Graduate school

機能解析生物学演習1B

2023   Weekly class   Graduate school

後期特別研究

2023   Intensive lecture   Graduate school

専門生物学実験Ｂ

2023   Practical Training   Undergraduate

生物学特別研究3B

2023   Intensive lecture   Graduate school

生物学特別研究1A

2022   Intensive lecture   Graduate school

機能解析生物学演習1A

2022   Intensive lecture   Graduate school

機能解析生物学特論A

2022   Weekly class   Graduate school

生物学特別研究1B （杉本）

2022   Intensive lecture   Graduate school

機能解析生物学演習1B （中百舌鳥）

2022   Weekly class   Graduate school

機能解析生物学演習1B （杉本）

2022   Intensive lecture   Graduate school

生物学の潮流

2022   Weekly class   Undergraduate

生物学実験Ｓ

2022   Intensive lecture   Undergraduate

生物学実験Ａ

2022   Weekly class   Undergraduate

前期特別研究（M２生物学分野）

2022   Intensive lecture   Graduate school

代謝生化学

2022   Weekly class   Undergraduate

専門生物学実験Ｂ

2022   Weekly class   Undergraduate

専門生物学演習

2022   Intensive lecture   Undergraduate

生命と環境/杉本［全］S

2022   Weekly class   Graduate school

生物学実験B/必:理<生>選:<生以外>(市:時間割表参照)S

2022   Weekly class   Graduate school

前期特別研究

2021     Graduate school

専門生物学実験B

2021     Undergraduate

特別研究

2021     Undergraduate

生物学実験A

2021     Undergraduate

生物学実験S

2021     Undergraduate

生物学の潮流

2021     Undergraduate

生体分子機能学演習

2021     Graduate school

代謝調節機能学特論

2021     Graduate school

代謝生化学

2021     Undergraduate

専門生物学演習

2021     Undergraduate

生命と環境

2021     Undergraduate

専門生物学実験B

2020     Undergraduate

特別研究

2020     Undergraduate

生物学実験A

2020     Undergraduate

生物学実験S

2020     Undergraduate

生物学の潮流

2020     Undergraduate

生体分子機能学演習

2020     Graduate school

代謝調節機能学特論

2020     Graduate school

代謝生化学

2020     Undergraduate

専門生物学演習

2020     Undergraduate

生命と環境

2020     Undergraduate

前期特別研究

2020     Graduate school

生命と環境

2019     Undergraduate

代謝調節機能学特論

2019     Graduate school

生体分子機能学演習

2019     Graduate school

専門生物学実験B

2019     Undergraduate

特別研究

2019     Undergraduate

生物学実験A

2019     Undergraduate

生物学実験S

2019     Undergraduate

生物学の潮流

2019     Undergraduate

代謝生化学

2019     Undergraduate

専門生物学演習

2019     Undergraduate

前期特別研究

2019     Graduate school

専門生物学演習

2018     Undergraduate

前期特別研究

2018     Graduate school

生物学の潮流

2018     Undergraduate

生物学実験S

2018     Undergraduate

現代科学と人間

2018     Undergraduate

生物学実験A

2018     Undergraduate

特別研究

2018     Undergraduate

専門生物学実験B

2018     Undergraduate

生体分子機能学演習

2018     Graduate school

代謝調節機能学特論

2018     Graduate school

生命と環境

2018     Undergraduate

代謝生化学

2018     Undergraduate

前期特別研究

2017     Graduate school

生物学実験A

2017     Undergraduate

生体分子機能学演習

2017     Graduate school

代謝調節機能学特論

2017     Graduate school

生物学実験S

2017     Undergraduate

特別研究

2017     Undergraduate

専門生物学演習

2017     Undergraduate

専門生物学実験B

2017     Undergraduate

現代科学と人間

2017     Undergraduate

代謝生化学

2017     Undergraduate

生物学の潮流

2017     Undergraduate

生体分子機能学演習

2016     Graduate school

代謝調節機能学特論

2016     Graduate school

生物学実験S

2016     Undergraduate

特別研究

2016     Undergraduate

専門生物学演習

2016     Undergraduate

専門生物学実験B

2016     Undergraduate

現代科学と人間

2016     Undergraduate

代謝生化学

2016     Undergraduate

生物学の潮流

2016     Undergraduate

生物学実験S

2015     Undergraduate

特別研究

2015     Undergraduate

専門生物学演習

2015     Undergraduate

専門生物学実験B

2015     Undergraduate

代謝生化学

2015     Undergraduate

現代科学と人間

2015     Undergraduate

生物学の潮流

2015     Undergraduate

教育方法の改善  2020

教育方法の改善  2020

教育方法の改善  2019

FD活動への貢献  2019

FD活動への貢献  2018

FD活動への貢献  2017

2017