Updated on 2025/04/22

写真a

 
SOTTA NAOYUKI
 
Organization
Graduate School of Agriculture Department of Agricultural Biology Assistant Professor
School of Agriculture Department of Agricultural Biology
Title
Assistant Professor
Affiliation
Institute of Agriculture

Position

  • Graduate School of Agriculture Department of Agricultural Biology 

    Assistant Professor  2024.04 - Now

  • School of Agriculture Department of Agricultural Biology 

    Assistant Professor  2024.04 - Now

Degree

  • 博士（農学） （ The University of Tokyo ）

Research Areas

  • Life Science / Plant nutrition and soil science

Professional Memberships

  • JAPANESE SOCIETY OF SOIL SCIENCE AND PLANT NUTRITION

  • THE JAPANESE SOCIETY FOR MATHEMATICAL BIOLOGY

  • THE JAPANESE SOCIETY OF PLANT PHYSIOLOGISTS

Awards

  • 第42回 日本土壌肥料学会奨励賞

    2024   日本土壌肥料学会   栄養輸送や応答の数理モデル研究

Job Career (off-campus)

  • Osaka Metropolitan University   Graduate School of Agriculture Department of Agricultural Biology

    2024.04 - Now

  • The University of Tokyo   Department of Applied Biological Chemistry, Laboratory of Plant Nutrition and Fertilizers

    2018.05 - 2024.03

Papers

  • Ribosome stalling-induced NIP5;1 mRNA decay triggers ARGONAUTE1-dependent transcription downregulation Reviewed

    Mayuki Tanaka, Naoyuki Sotta, Susan Duncan, Yukako Chiba, Hitoshi Onouchi, Athanasius F M Marée, Satoshi Naito, Verônica A Grieneisen, Toru Fujiwara

    Nucleic Acids Research   53 ( 5 )   2025.02（ ISSN:03051048 ）

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    Authorship：Corresponding author   Publishing type：Research paper (scientific journal)  

    DOI： 10.1093/nar/gkaf159

    PubMed

  • Efficient production system for hydrogel-based transparent soil for plant root observation Reviewed

    Naoyuki Sotta, Wenhao Li, Toru Fujiwara

    BioTechniques   77 ( 1 )   35 - 39   2025.01（ ISSN:07366205 ）

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    Authorship：Lead author   Publishing type：Research paper (scientific journal)  

    DOI： 10.1080/07366205.2025.2457892

    PubMed

  • Efficient production ofhydrogel-based transparent soil v1

    Naoyuki Sotta

    protocols.io   2024.10

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    Authorship：Lead author,　Last author,　Corresponding author  

    DOI： 10.17504/protocols.io.3byl49oyogo5/v1

  • 奨-3 栄養輸送や応答の数理モデル研究（奨励賞 2024年度福岡大会）

    反田 直之

    日本土壌肥料学会講演要旨集   70 ( 0 )   213 - 213   2024.08（ ISSN:02885840 ） （ eISSN:24240575 ）

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  • Impact of translational regulation on diel expression revealed by time‐series ribosome profiling in Arabidopsis Reviewed

    Haruka Aoyama, Toshihiro Arae, Yui Yamashita, Atsushi Toyoda, Satoshi Naito, Naoyuki Sotta, Yukako Chiba

    The Plant Journal   2024.06

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    Authorship：Corresponding author   Publishing type：Research paper (scientific journal)  

    DOI： 10.1111/tpj.16716

  • Time-course analysis system for leaf feeding marks revealed effect of <i>Arabidopsis thaliana</i> trichomes on herbivore insect feeding behavior Reviewed

    Naoyuki Sotta, Toru Fujiwara

    Journal of Experimental Botany   75 ( 17 )   5428 - 5437   2024.04（ ISSN:0022-0957 ） （ eISSN:1460-2431 ）

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    Authorship：Lead author,　Corresponding author   Publishing type：Research paper (scientific journal)  

    Abstract

    Bioassay with insect herbivore is a common approach to studying plant defense levels. While measuring insect growth rate as a negative indicator of plant defense levels is simple and straightforward, analyzing more detailed feeding behavior parameters of insects, such as feeding rates, leaf area consumed per feeding event, intervals between feeding events, and spatiotemporal patterns of feeding sites on leaves, is more informative. However, such observations are generally time consuming and labor-intensive. Here, we provide a semi-automated system for quantifying feeding behavior parameters of insects feeding on plant leaves. Automated photo scanners record time-course development of feeding marks on leaves. An image analysis pipeline processes the scanned images and extracts leaf area. By analyzing changes in leaf area over time, it detects insect feeding events and calculates the leaf area consumed during each feeding event, providing quantitative parameters of insects feeding behavior. In addition, it visualizes spatio-temporal changes in feeding sites, providing a measure of the complex behavior of insects on leaves. Using this analysis pipeline, we demonstrate that Arabidopsis thaliana trichomes reduce insect feeding rate, but not feeding duration or intervals between feeding events. Our image acquisition system requires only photo a scanner and a laptop computer and does not require any specialized equipment. The analysis software pipeline is provided as an ImageJ macro and R package and is available at no cost. Taken together, our work provides a scalable method for quantitative assessment of insect feeding behavior on leaves, facilitating understanding of plant defense mechanisms.

    DOI： 10.1093/jxb/erae184

    PubMed

  • IMA peptides regulate root nodulation and nitrogen homeostasis by providing iron according to internal nitrogen status Reviewed

    Momoyo Ito, Yuri Tajima, Mari Ogawa-Ohnishi, Hanna Nishida, Shohei Nosaki, Momona Noda, Naoyuki Sotta, Kensuke Kawade, Takehiro Kamiya, Toru Fujiwara, Yoshikatsu Matsubayashi, Takuya Suzaki

    Nature Communications   2024.01

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    Publishing type：Research paper (scientific journal)  

    DOI： 10.1038/s41467-024-44865-4

  • Boric acid intercepts 80S ribosome migration from AUG-stop by stabilizing eRF1 Reviewed

    Mayuki Tanaka, Takeshi Yokoyama, Hironori Saito, Madoka Nishimoto, Kengo Tsuda, Naoyuki Sotta, Hideki Shigematsu, Mikako Shirouzu, Shintaro Iwasaki, Takuhiro Ito, Toru Fujiwara

    Nature Chemical Biology   2024.01（ ISSN:1552-4450 ） （ eISSN:1552-4469 ）

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    Publishing type：Research paper (scientific journal)  

    DOI： 10.1038/s41589-023-01513-0

    Other URL： https://www.nature.com/articles/s41589-023-01513-0

  • A Multi-Target Regression Method to Predict Element Concentrations in Tomato Leaves Using Hyperspectral Imaging Reviewed

    Andrés Aguilar Ariza, Naoyuki Sotta, Toru Fujiwara, Wei Guo, Takehiro Kamiya

    Plant Phenomics   2024.01

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    Publishing type：Research paper (scientific journal)  

    DOI： 10.34133/plantphenomics.0146

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MISC

  • オミックス技術が切り開く土壌肥料学 8. Translatome: ribosome profilingによる遺伝子翻訳の網羅解析 Invited Reviewed

    反田 直之

    日本土壌肥料学雑誌   95 ( 2 )   96 - 101   2024.04

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    Authorship：Lead author,　Last author,　Corresponding author   Publishing type：Article, review, commentary, editorial, etc. (scientific journal)  

    DOI： 10.20710/dojo.95.2_96

  • Nutrient acquisition in a facultative parasitic plant Phtheirospermum japonicum

    徳本勇闘, 稲葉尚子, 反田直之, 神谷岳洋, 矢内純太, 藤原徹, 吉田聡子

    日本植物生理学会年会(Web)   65th   2024

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  • Regulatory mechanisms and contribution of morphogenesis of plasma membrane H<sup>+</sup>-ATPase in the liverwort Marchantia polymorpha

    水谷未耶, 水谷未耶, 中根功太郎, 奥村将樹, 楊為雄, 田中周, 井上普一郎, 藤原徹, 神谷岳洋, 反田直之, 西浜竜一, 石崎公庸, 木下俊則, 木下俊則

    日本植物生理学会年会(Web)   65th   2024

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Presentations

  • Analysis of root system architecture under heterogeneous nutrient conditions using hydrogel-based transparent soil system

    Naoyuki Sotta, Wenhao Li, Toru Fujiwara

    The 66th Annual Meeting of the Japanese Society of Plant Physiologists  2025.03 

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    Presentation type：Oral presentation (general)  

Grant-in-Aid for Scientific Research

  • 植物のホウ素過剰ストレス経験が子孫のホウ素過剰耐性を向上させる仕組みの解明

    Grant-in-Aid for Scientific Research(C)  2027

  • 植物のホウ素過剰ストレス経験が子孫のホウ素過剰耐性を向上させる仕組みの解明

    Grant-in-Aid for Scientific Research(C)  2026

  • 植物のホウ素過剰ストレス経験が子孫のホウ素過剰耐性を向上させる仕組みの解明

    Grant-in-Aid for Scientific Research(C)  2025

  • Quantitative and comprehensive analysis of root system structure and nutritional status of plants under heterogeneous nutrient environments

    Grant-in-Aid for Transformative Research Areas (A)  2024

  • Investigation of the role of boron in plant defense against herbivore

    Grant-in-Aid for Early-Career Scientists  2024

Charge of on-campus class subject

  • 応用生物科学概論

    2024   Weekly class   Undergraduate

  • 応用生物科学研究実験2A

    2024   Intensive lecture   Graduate school

  • 応用生物科学研究実験1A

    2024   Intensive lecture   Graduate school

  • 応用生物科学ゼミナール2A

    2024   Intensive lecture   Graduate school

  • 応用生物科学ゼミナール1A

    2024   Intensive lecture   Graduate school

  • 応用生物科学特別研究実験3A

    2024   Intensive lecture   Graduate school

  • 応用生物科学特別研究実験2A

    2024   Intensive lecture   Graduate school

  • 応用生物科学特別研究実験1A

    2024   Intensive lecture   Graduate school

  • 応用生物科学課題研究

    2024   Intensive lecture   Undergraduate

  • 応用生物科学英語

    2024   Intensive lecture   Undergraduate

  • 応用生物科学研究プレゼンテーション

    2024   Intensive lecture   Graduate school

  • 応用生物科学研究実験2B

    2024   Intensive lecture   Graduate school

  • 応用生物科学研究実験1B

    2024   Intensive lecture   Graduate school

  • 応用生物科学ゼミナール2B

    2024   Intensive lecture   Graduate school

  • 応用生物科学ゼミナール1B

    2024   Intensive lecture   Graduate school

  • 応用生物科学特別研究実験3B

    2024   Intensive lecture   Graduate school

  • 応用生物科学特別研究実験2B

    2024   Intensive lecture   Graduate school

  • 応用生物科学特別研究実験1B

    2024   Intensive lecture   Graduate school

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